Archive of Kirill's P450 Café - 2004

by Kirill Degtyarenko

Last modified: Fri Oct 6 12:31:35 BST 2006

24 December 2004.

Merkwirth, C., Mauser, H., Schulz-Gasch, T., Roche, O., Stahl, M. and Lengauer, T. (2004) Ensemble methods for classification in cheminformatics. J .Chem. Inf. Comput. Sci. 44, 1971-1978.

17 December 2004.

Paternolli, C., Antonini, M., Ghisellini, P. and Nicolini, C. (2004) Recombinant cytochrome P450 immobilization for biosensor applications. Langmuir 20, 11706-11712.

10 December 2004.

Sargisova, Y., Pierfederici, F.-M., Scirè, A., Bertoli, E., Tanfani, F., Febbraio, F., Briante, R., Karapetyan, Y. and Mardanyan, S.(2004) Computational, spectroscopic, and resonant mirror biosensor analysis of the interaction of adrenodoxin with native and tryptophan-modified NADPH-adrenodoxin reductase. Proteins 57, 302-310.

3 December 2004.

Li, H. and Poulos, T.L. (2004) Crystallization of cytochromes P450 and substrate-enzyme interactions. Curr. Top. Med. Chem. 4, 1789-1802.

26 November 2004.

Hlavica, P. (2004) Models and mechanisms of O-O bond activation by cytochrome P450: A critical assessment of the potential role of multiple active intermediates in oxidative catalysis. Eur. J. Biochem. 271, 4335-4360.

19 November 2004.

Daiber, A., Shoun, H. and Ullrich, V. (2005) Nitric oxide reductase (P450_nor) from Fusarium oxysporum. J. Inorg. Biochem. 99, 185-193.

12 November 2004.

Podust, L.M., Yermalitskaya, L.V., Lepesheva, G.I., Podust, V.N., Dalmasso, E.A. and Waterman, M.R. (2004) Estriol bound and ligand-free structures of sterol 14-demethylase. Structure 12, 1937-1945.

5 November 2004.

Inoue, K. (2004) Carotenoid hydroxylation - P450 finally! Trends Plant Sci. 9, 515-517.

29 October 2004.

High, S. and Abell, B.M. (2004) Tail-anchored protein biosynthesis at the endoplasmic reticulum: the same but different. Biochem. Soc. Trans. 32, 659-662.

22 October 2004.

Bando, S., Takano, T., Yubisui, T., Shirabe, K., Takeshita, M. and Nakagawa, A. (2004) Structure of human erythrocyte NADH-cytochrome b₅ reductase. Acta Crystallogr. D60, 1929-1934. [Supplementary Material]

human NADH-cytochrome b5 reductase structure

PDB reference: 1UMK

15 October 2004.

Krauser, J.A., Voehler, M., Tseng, L.-H., Schefer, A.B., Godejohann, M. and Guengerich, F.P. (2004) Testosterone 1-hydroxylation by human cytochrome P450 3A4. Eur. J. Biochem. 271, 3962-3969.

8 October 2004.

Kurian, J.R., Bajad, S., Miller, J.L., Chin, N.A. and Trepanier, L.A. (2004) NADH cytochrome b₅ reductase and cytochrome b₅ catalyze the microsomal reduction of xenobiotic hydroxylamines and amidoximes in humans. J. Pharmacol. Exp. Ther. 311, 1171-1178.

1 October 2004.

Correia, M.A., Sadeghi, S. and Mundo-Paredes, E. (2005) Cytochrome P450 ubiquitination: branding for the proteolytic slaughter? Annu. Rev. Pharmacol. Toxicol. 45, 439-464.

24 September 2004.

Rezen, T., Debeljak, N., Kordiš, D. and Rozman, D. (2004) New aspects on lanosterol 14-demethylase and cytochrome P450 evolution: lanosterol/cycloartenol diversification and lateral transfer. J. Mol. Evol. 59, 51-58.

17 September 2004.

Shaik, S., De Visser, S.P. and Kumar, D. (2004) One oxidant, many pathways: a theoretical perspective of monooxygenation mechanisms by cytochrome P450 enzymes. J. Biol. Inorg. Chem. 9, 661-668.

10 September 2004.

Puk, O., Bischoff, D., Kittel, C., Pelzer, S., Weist, S., Stegmann, E., Süssmuth, R.D. and Wohlleben, W. (2004) Biosynthesis of chloro--hydroxytyrosine, a nonproteinogenic amino acid of the peptidic backbone of glycopeptide antibiotics. J. Bacteriol. 186, 6093-6100.

3 September 2004.

Kuznetsov, V.Yu., Ivanov, Yu.D. and Archakov, A.I. (2004) Atomic force microscopy revelation of molecular complexes in the multiprotein cytochrome P450 2B4-containing system. Proteomics 4, 2390-2396.

27 August 2004.

Willingham, A.T. and Keil, T. (2004) A tissue specific cytochrome P450 required for the structure and function of Drosophila sensory organs. Mech. Dev. 121, 1289-1297.

20 August 2004.

Gaucher, E.A., Graddy, L.G., Li, T., Simmen, R.C., Simmen, F.A., Schreiber, D.R., Liberles, D.A., Janis, C.M. and Benner, S.A. (2004) The planetary biology of cytochrome P450 aromatases. BMC Biology 2, 19.

6 August 2004.

Urlacher, V.B. and Schmid, R.D. (2004) Protein engineering of the cytochrome P450 monooxygenase from Bacillus megaterium. Methods Enzymol. 388, 208-224.

30 July 2004.

Williams, P.A., Cosme, J., Matak Vinkovic, D., Ward, A., Angove, H.C., Day, P.J., Vonrhein, C., Tickle, I.J. and Jhoti, H. (2004) Crystal structures of human cytochrome P450 3A4 bound to metyrapone and progesterone. Science 305, 683-686. [Supplementary Material]

Peripheral binding of progesterone to CYP3A4

16 July 2004.

Blair, E., Greaves, J., and Farmer, P.J. (2004) High-temperature electrocatalysis using thermophilic P450 CYP119: Dehalogenation of CCl₄ to CH₄. J. Am. Chem. Soc. 126, 8632-8633. [Supplementary Material]

Fe(I) + RCl + H(+) -> Fe(III) + RH + Cl(-)

9 July 2004.

Umemura, M., Su, F., Takaya, N., Shiro, Y. and Shoun, H. (2004) D88A mutant of cytochrome P450nor provides kinetic evidence for direct complex formation with electron donor NADH. Eur. J. Biochem. 271, 2887-2894.

Spectral changes during reduction with NADPH of the Fe(3+)-NO complex

2 July 2004.

Wade, R.C., Winn, P.J., Schlichting, I. and Sudarko (2004) A survey of active site access channels in cytochromes P450. J. Inorg. Biochem. 98, 1175-1182.

This Focused Review appears in the special issue on Advances in the Inorganic Biochemistry of Cytochrome P450, Nitric Oxide Synthase and Related Systems (Journal of Inorganic Biochemistry, vol. 98, no. 7, 2004).

25 June 2004.

Nelson, D.R., Schuler, M.A., Paquette, S.M., Werck-Reichhart, D. and Bak, S. (2004) Comparative genomics of rice and Arabidopsis. Analysis of 727 cytochrome P450 genes and pseudogenes from a monocot and a dicot. Plant Physiol. 135, 756-772. [Supplementary Material]

18 June 2004.

Posner, G.H. and O'Neill, P.M. (2004) Knowledge of the proposed chemical mechanism of action and cytochrome P450 metabolism of antimalarial trioxanes like artemisinin allows rational design of new antimalarial peroxides. Acc. Chem. Res. 37, 397-404.

11 June 2004.

Zhu, H., Larade, K., Jackson, T.A., Xie, J., Ladoux, A., Acker, H., Berchner-Pfannschmidt, U., Fandrey, J., Cross, A.R., Lukat-Rodgers, G.S., Rodgers, K.R. and Bunn, H.F. (2004) NCB5OR is a novel soluble NAD(P)H reductase localized in the endoplasmic reticulum. J. Biol. Chem. 279, 30316-30325.

4 June 2004.

Schuetz, E.G., Relling, M.V., Kishi, S., Yang, W., Das, S., Chen, P., Cook, E.H., Rosner, G.L., Pui, C.H., Blanco, J.G., Edick, M.J., Hancock, M.L., Winick, N.J., Dervieux, T., Amylon, M.D., Bash, R.O., Behm, F.G., Camitta, B.M., Raimondi, S.C., Goh, B.C., Lee, S.C., Wang, L.Z., Fan, L., Guo, J.Y., Lamba, J., Lim, R., Lim, H.L., Ong, A.B., Lee, H.S., Kuehl, P., Zhang, J., Lin, Y., Assem, M., Schuetz, J., Watkins, P.B., Daly, A., Wrighton, S.A., Hall, S.D., Maurel, P., Brimer, C., Yasuda, K., Venkataramanan, R., Strom, S., Thummel, K. and Boguski, M.S. (2004) PharmGKB Update: II. CYP3A5, Cytochrome P450, Family 3, Subfamily A, Polypeptide 5. Pharmacol. Rev. 56, 159.

28 May 2004.

Nebert, D.W., Dalton, T.P., Okey, A.B. and Gonzalez, F.J. (2004) Role of aryl hydrocarbon receptor-mediated induction of the CYP1 enzymes in environmental toxicity and cancer. J. Biol. Chem. 279, 23847-23850.

21 May 2004.

Le Quéré, V., Plée-Gautier, E., Potin, P., Madec, S. and Salaün, J.-P. (2004) Human CYP4F3 are the main catalysts in the oxidation of fatty acid epoxides. J. Lipid Res. 45, 1446-1158.

14 May 2004.

Ceccarelli, E.A., Arakaki, A.K., Cortez, N. and Carrillo, N. (2004) Functional plasticity and catalytic efficiency in plant and bacterial ferredoxin-NADP(H) reductases. Biochim. Biophys. Acta 1698, 155-165.

7 May 2004.

Gustafsson, M.C.U., Roitel, O., Marshall, K.R., Noble, M.A., Chapman, S.K., Pessegueiro, A., Fulco, A.J., Cheesman, M.R., von Wachenfeldt, C. and Munro, A.W. (2004) Expression, purification, and characterization of Bacillus subtilis cytochromes P450 CYP102A2 and CYP102A3: flavocytochrome homologues of P450 BM3 from Bacillus megaterium. Biochemistry 43, 5474-5487.

30 April 2004.

Parajuli, N., Basnet, D.B., Lee, H.C., Sohng, J.K. and Liou, K. (2004) Genome analyses of Streptomyces peucetius ATCC 27952 for the identification and comparison of cytochrome P450 complement with other Streptomyces. Arch. Biochem. Biophys. 425, 233-241.

23 April 2004.

Kushiro, T., Okamoto, M., Nakabayashi, K., Yamagishi, K., Kitamura, S., Asami, T., Hirai, N., Koshiba, T., Kamiya, Y. and Nambara, E. (2004) The Arabidopsis cytochrome P450 CYP707A encodes ABA 8'-hydroxylases: key enzymes in ABA catabolism. EMBO J. 23, 1647-1656.

16 April 2004.

Immoos, C.E., Chou, J., Bayachou, M., Blair, E., Greaves, J. and Farmer, P.J. (2004) Electrocatalytic reductions of nitrite, nitric oxide, and nitrous oxide by thermophilic cytochrome P450 CYP119 in film-modified electrodes and an analytical comparison of its catalytic activities with myoglobin. J. Am. Chem. Soc. 126, 4934-4942. [Supplementary Material]

Cyclic voltammograms of CYP119/DDAB in the absence and presence of sodium nitrite

9 April 2004.

Murataliev, M.B., Feyereisen, R. and Walker, F.A. (2004) Electron transfer by diflavin reductases. Biochim. Biophys. Acta 1698, 1-26.

2 April 2004.

Petrini, G.A., Altabe, S.G. and Uttaro, A.D. (2004) Trypanosoma brucei oleate desaturase may use a cytochrome b₅-like domain in another desaturase as an electron donor. Eur. J. Biochem. 271, 1079-1086.

26 March 2004.

He, K., Talaat, R.E. and Woolf, T.F. (2004) Incorporation of an oxygen from water into troglitazone quinone by cytochrome P450 and myeloperoxidase. Drug Metab. Dispos. 32, 442-446.

19 March 2004.

Fleming, I. (2004) Cytochrome P450 epoxygenases as EDHF synthase(s). Pharmacol. Res. 49, 525-533.

12 March 2004.

Gupta, R.P., Hollis, B.W., Patel, S.B., Patrick, K.S. and Bell, N.H. (2004) CYP3A4 is a human microsomal vitamin D 25-hydroxylase. receptors and xenobiotic metabolism. J. Bone Miner. Res. 19, 680-688.

5 March 2004.

Traber, M.G. (2004) Vitamin E, nuclear receptors and xenobiotic metabolism. Arch. Biochem. Biophys. 423, 6-11.

27 February 2004.

Ohta, D. and Mizutani, M. (2004) Redundancy or flexibility: molecular diversity of the electron transfer components for P450 monooxygenases in higher plants. Front. Biosci. 9, 1587-1597.

20 February 2004.

Reedy, C.J. and Gibney, B.G. (2004) Heme protein assemblies. Chem. Rev. 104, 617-650. [Supplementary Material]
This review appears in the special issue of Chemical Reviews on Biomimetic Inorganic Chemistry (Chemical Reviews vol. 104, no. 2, 2004).

13 February 2004.

Myasoedova, K.N. and Stel'mashchuk, V.Ya. (2003) Cytochrome P450_{58 kDa}: a possible universal hexameric structure of cytochromes P450 in membranes of hepatocytes. Dokl. Biochem. Biophys. 393, 337-340.

6 February 2004.

Cang, H.-X., Han, Y.-P.W.Y., Zhou, J.-X. and Bi, R.-C. (2003) The space experiment of protein crystallization aboard the Chinese spacecraft SZ-3. Microgravity Sci. Technol. 14, 13-16.

"At least, the crystals of cytochrome b₅ mutant could diffract X-ray beyond the highest resolution reported so far for the same kind of crystals."

30 January 2004.

Akiyama, R., Kajiwara, S. and Shishido, K. (2004) Catalytic reaction of basidiomycete Lentinula edodes cytochrome P450, Le.CYP1 enzyme produced in yeast. Biosci. Biotechnol. Biochem. 68, 79-84.

23 January 2004.

Cryle, M.J. and De Voss, J.J. (2004) Carbon-carbon bond cleavage by cytochrome P450_BioI (CYP107H1). Chem. Commun. (no. 1), 86-87. [Supplementary Material]

16 January 2004.

Miyoshi, K., Ahn, B.-O., Kawakatsu, T., Ito, Y., Itoh, J.-I., Nagato, Y. and Kurata, N. (2004) PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450. Proc. Natl. Acad. Sci. USA 101, 875-880.

9 January 2004.

Welcome to Nature Structural & Molecular Biology - a new title for Nature Structural Biology on its tenth anniversary!

Flinspach, M.L., Li, H., Jamal, J., Yang, W., Huang, H., Hah, J.-M., Gómez-Vidal, J.A., Litzinger, E.A., Silverman, R.B. and Poulos, T.L. (2004) Structural basis for dipeptide amide isoform-selective inhibition of neuronal nitric oxide synthase. Nature Struct. Mol. Biol. 11, 54-59. [Supplementary Material]

2 January 2004.

Phadtare, S., Parekh, P., Shah, S., Tambe, A., Joshi, R., Sainkar, S.R., Prabhune, A. and Sastry, M. (2003) Candida bombicola cells immobilized on patterned lipid films as enzyme sources for the transformation of arachidonic acid to 20-HETE. Biotechnol. Prog. 19, 1659-1663.

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