Archive of Kirill's P450 Café
By Kirill Degtyarenko
Last modified: Thu Apr 15 15:51:05 BST 2004
26 December 1997.
And finally...
Happy New Year!
19 December 1997.
The last week before Christmas!
Today I would like to present two very interesting papers:
- Lee, H.C., Scheuring, E., Peisach, J. and Chance, M.R. (1997)
Electron spin echo envelope modulation and extended X-ray absorption fine
structure studies of active site models of oxygenated cobalt-substituted
hemoproteins: Correlating electron-nuclear couplings and
metal-ligand bond lengths.
J. Am. Chem. Soc. 119, 12201-12209.
- Reipa, V., Mayhew, M.P. and Vilker, V.L. (1997)
A direct electrode-driven P450 cycle for biocatalysis.
Proc. Natl. Acad. Sci. USA 94, 13554-13558.
Have good holidays.
12 December 1997.
-
Martínez, J., Alonso, P.J., Gómez-Moreno, C. and Medina, M.
(1997)
One- and two-dimensional ESEEM spectroscopy of flavoproteins.
Biochemistry 36, 15526-15537.
5 December 1997.
-
Aliverti, A. and Zanetti, G. (1997)
A three-domain iron-sulfur flavoprotein obtained through gene
fusion of ferredoxin and ferredoxin-NADP+ reductase from
spinach leaves.
Biochemistry 36, 14771-14777.
28 November 1997.
-
Kim, J. and Kemper, B. (1997)
Phenobarbital alters protein binding to the CYP2B1/2
phenobarbital-responsive unit in native chromatin.
J. Biol. Chem. 272, 29423-29425.
21 November 1997.
-
Schwarz, D., Kisselev, P., Pfeil, W., Pisch, P., Bornscheuer, W. and
Schmid, R.D. (1997)
Evidence that nonbilayer phase propensity of the membrane is important for the
side chain cleavage activity of cytochrome P450SCC (CYP11A1).
Biochemistry 36, 14262-14270.
14 November 1997.
-
Daff, S.N., Chapman, S.K., Turner, K.L., Holt, R.A., Govindaraj, S.,
Poulos, T.L. and Munro, A.W. (1997)
Redox control of the catalytic cycle of flavocytochrome P-450 BM3.
Biochemistry 36, 13816-13823.
7 November 1997.
-
Collman, J.P. (1997)
Functional analogs of heme protein active sites.
Inorg. Chem. 36, 5145-5155.
31 October 1997.
24 October 1997.
-
Crane, B.R., Arvai, A.S., Gachhui, R., Wu, C., Ghosh, D.K., Getzoff, E.D.,
Stuehr, D.J. and Tainer, J.A. (1997)
The structure of nitric oxide synthase oxygenase domain and inhibitor
complexes.
Science 278, 425-431.
Until very recent, many (including myself) believed that oxygenase domain of
NOS is just highly diverged form of P450 - e.g., see
[Degtyarenko, K.N. and Archakov, A.I. (1993)
FEBS Lett. 332, 1-8] for pairwise alignment of haem domains of
P450BM-3 and NOS. Now we can see that NOS is definitely not
a P450. However, it won't prevent me from publishing some more NOS news here in
the Directory of P450-containing Systems.
17 October 1997.
-
Hurley, J.K., Weber-Main, A.M., Stankovich, M.T., Benning, M.M., Thoden, J.B.,
Vanhooke, J.L., Holden, H.M., Chae, Y.K., Xia, B., Cheng, H., Markley, J.L.,
Martínez-Júlvez, M., Gómez-Moreno, C.,
Schmeits, J.L. and Tollin, G. (1997)
Structure-function relationships in Anabaena ferredoxin:
Correlations between X-ray crystal structures, reduction potentials, and rate
constants of electron transfer to ferredoxin:NADP+ reductase
for site-specific ferredoxin mutants.
Biochemistry 36, 11100-11117.
10 October 1997.
-
Banci, L., Bertini, I., Ferroni, F. and Rosato, A. (1997)
Solution structure of reduced microsomal rat cytochrome b5.
Eur. J. Biochem. 249, 270-279.
3 October 1997.
-
Park, S.-Y., Shimizu, H., Adachi, S.-i., Nakagawa, A., Tanaka, I.,
Nakahara, K., Shoun, H., Obayashi, E., Nakamura, H., Iizuka, T. and Shiro, Y.
(1997)
Crystal structure of nitric oxide reductase from denitrifying fungus
Fusarium oxysporum.
Nature Struct. Biol. 4, 827-832.
26 September 1997.
-
Wiseman, L.R. and Spencer, C.M. (1997)
Vorozole.
Drugs & Aging 11, 245-250.
19 September 1997.
-
Takagi, S., Suzuki, M., Shiragami, T. and Inoue, H. (1997)
Photochemical P-450 oxygenation of cyclohexene with water sensitized by
dihydroxy-coordinated (tetraphenylporphyrinato)antimony(V)
hexafluorophosphate.
J. Am. Chem. Soc. 119, 8712-8713.
12 September 1997.
-
Jenkins, C.M., Genzor, C.G., Fillat, M.F., Waterman, M.R. and
Gómez-Moreno, C. (1997)
Negatively charged Anabaena flavodoxin residues (Asp144 and
Glu145) are important for reconstitution of cytochrome P450
17-hydroxylase activity.
J. Biol. Chem. 272, 22509-22513.
5 September 1997.
-
Wong, L.-L., Westlake, A.C.G. and Nickerson, D.P. (1997)
Protein engineering of cytochrome P450cam.
Structure and Bonding 88, 175-207.
29 August 1997.
-
Holden, M., Mayhew, M., Bunk, D., Roitberg, A. and Vilker, V. (1997)
Probing the interactions of putidaredoxin with redox partners in camphor
P450 5-monooxygenase by mutagenesis of surface residues.
J. Biol. Chem. 272, 21720-21725.
22 August 1997.
-
Obayashi, E., Tsukamoto, K., Adachi, S.-i., Takahashi, S., Nomura, M.,
Iizuka, T., Shoun, H. and Shiro, Y. (1997)
Unique binding of nitric oxide to ferric nitric oxide reductase from
Fusarium oxysporum elucidated with infrared, resonance Raman, and
X-ray absorption spectroscopies.
J. Am. Chem. Soc. 119, 7807-7816.
15 August 1997.
-
Kazanis, S. and Pochapsky, T.C. (1997)
Structural features of the metal binding site and dynamics of gallium
putidaredoxin, a diamagnetic derivative of a
Cys4Fe2S2 ferredoxin.
J. Biomol. NMR 9, 337-346.
8 August 1997.
-
Urban, P., Mignotte, C., Kazmaier, M., Delorme, F. and Pompon, D. (1997)
Cloning, yeast expression, and characterization of the coupling of two
distantly related Arabidopsis thaliana NADPH-cytochrome P450
reductases with P450 CYP73A5.
J. Biol. Chem. 272, 19176-19186.
1 August 1997.
-
Jean, P., Pothier, J., Dansette, P.M., Mansuy, D. and Viari, A. (1997)
Automated multiple analysis of protein structures: Application to homology
modeling of cytochromes P450.
Proteins 28, 388-404.
25 July 1997.
-
Neumann, R. and Dahan, M. (1997)
A ruthenium-substituted polyoxometalate as an inorganic dioxygenase for
activation of molecular oxygen.
Nature 388, 353-355.
18 July 1997.
-
Unno, M., Christian, J.F., Benson, D.E., Gerber, N.C., Sligar, S.G. and
Champion, P.M. (1997)
Resonance Raman investigations of cytochrome P450cam complexed with
putidaredoxin.
J. Am. Chem. Soc. 119, 6614-6620.
11 July 1997.
-
Proniewicz, L.M. and Kincaid, J.R. (1997)
Vibrational coupling effects in the resonance Raman spectra of O2
adducts of heme proteins and model compounds.
Coord. Chem. Rev. 160, 81-127.
4 July 1997.
-
Mouro, C., Jung, C., Bondon, A. and Simonneaux, G. (1997)
Comparative Fourier transform infrared studies of the secondary structure and
the CO heme ligand environment in cytochrome P-450cam and cytochrome P-420cam.
Biochemistry 36, 8125-8134.
27 June 1997.
-
De Voss, J.J., Sibbesen, O., Zhang, Z. and Ortiz de Montellano, P.R. (1997)
Substrate docking algorithms and prediction of the substrate specificity of
cytochrome P450cam and its L244A mutant.
J. Am. Chem. Soc. 119, 5489-5498.
20 June 1997.
-
Lapko, A., Müller, A., Heese, O., Ruckpaul, K. and Heinemann, U. (1997)
Preparation and crystallization of a cross-linked complex of
bovine adrenodoxin and adrenodoxin reductase.
Proteins 28, 289-292.
13 June 1997.
-
Tan, Y., Patten, C.J., Smith, T. and Yang, C.S. (1997)
Competitive interactions between cytochromes P450 2A6 and 2E1 for
NADPH-cytochrome P450 oxidoreductase in the microsomal membranes
produced by a baculovirus expression system.
Arch. Biochem. Biophys. 342, 82-91.
6 June 1997.
-
Miyamoto, Y., Shinki, T., Yamamoto, K., Ohyama, Y., Iwasaki, H., Hosotani, R.,
Kasama, T., Takayama, H., Yamada, S. and Suda, T. (1997)
1
,25-dihydroxyvitamin
D3-24-hydroxylase (CYP24) hydroxylates the carbon at
the end of the side chain (C-26) of the C-24-fluorinated analog of
1,25-dihydroxyvitamin
D3.
J. Biol. Chem. 272, 14115-14119.
30 May 1997.
-
Breslow, R., Zhang, X. and Huang, Y. (1997)
Selective catalytic hydroxylation of a steroid by an artificial cytochrome
P-450 enzyme.
J. Am. Chem. Soc. 119, 4535-4536.
In fact this "artificial P450" catalyst is a manganese porphyrin with four
attached cyclodextrins.
23 May 1997.
-
Bendall, D.S., Ed. (1996) Protein Electron Transfer.
Bios Scientific Publishers, Oxford.
For a review, see
16 May 1997.
-
Sarma, S., Dangi, B., Yan, C., DiGate, R.J., Banville, D.L. and Guiles, R.D.
(1997a)
Characterization of a sitedirected mutant of cytochrome
b5 designed to alter axial imidazole ligand plane
orientation.
Biochemistry 36, 5645-5657.
-
Sarma, S., DiGate, R.J., Goodin, D.B., Miller, C.J. and Guiles, R.D.
(1997b)
Effect of axial ligand plane reorientation on electronic and electrochemical
properties observed in the A67V mutant of rat cytochrome b5.
Biochemistry 36, 5658-5668.
9 May 1997.
2 May 1997.
-
Joseph-Horne, T. and Hollomon, D.W. (1997)
Molecular mechanisms of azole resistance in fungi.
FEMS Microbiol. Lett. 149, 141-149.
25 April 1997.
-
Ingelman, M., Bianchi, V. and Eklund, H. (1997)
The three-dimensional structure of flavodoxin reductase from
Escherichia coli at 1.7 Å resolution.
J. Mol. Biol. 268, 147-157.
18 April 1997.
11 April 1997.
-
Coleman, J.O.D., Blake-Kalff, M.M.A and Davies, T.G.E. (1997)
Detoxification of xenobiotics by plants: chemical modification and vacuolar
compartmentation.
Trends Plant Sci. 2, 144-151.
4 April 1997.
-
Sultana, S., Nirodi, C.S., Ram, N., Prabhu, L. and Padmanaban, G. (1997)
A 65-kDa protein mediates the positive role of heme in regulating the
transcription of CYP2B1/B2 gene in rat liver.
J. Biol. Chem. 272, 8895-8900.
28 March 1997.
-
Cubberley, R.R., Alderton, W.K., Boyhan, A., Charles, I.G., Lowe, P.N. and
Old, R.W. (1997)
Cysteine-200 of human inducible nitric oxide synthase is essential for
dimerization of haem domains and for binding of haem, nitroarginine and
tetrahydrobiopterin.
Biochem. J. 323, 141-146.
21 March 1997.
-
Chang, Y.-T., Stiffelman, O.B., Vakser, I.A., Loew, G.H., Bridges, A. and
Waskell, L. (1997)
Construction of a 3D model of cytochrome P450 2B4.
Protein Engineering 10, 119-129.
14 March 1997.
-
von Wachenfeldt, C., Richardson, T.H., Cosme, J. and Johnson, E.F. (1997)
Microsomal P450 2C3 is expressed as a soluble dimer in Escherichia coli
following modifications of its N-terminus.
Arch. Biochem. Biophys. 339, 107-114.
7 March 1997.
-
Harlow, G.R. and Halpert, J.R. (1997)
Alanine-scanning mutagenesis of a putative substrate recognition site
in human cytochrome P450 3A4.
Role of residues 210 and 211 in flavonoid activation and substrate specificity.
J. Biol. Chem. 272, 5396-5402.
28 February 1997.
-
Lee-Robichaud, P., Kaderbhai, M.A., Kaderbhai, N., Wright, J.N. and Akhtar, M.
(1997)
Interaction of human CYP17
(P-45017,
17-hydroxylase-17,20-lyase)
with cytochrome b5: Importance of the orientation of the
hydrophobic domain of cytochrome b5.
Biochem. J. 321, 857-863.
14 February 1997.
7 February 1997.
31 January 1997.
Don't be confused - `cytochrome c reductase fragment'
is actually cytochrome b5 reductase fragment!
24 January 1997.
-
Curnow, K.M., Mulatero, P., Emeric-Blanchouin, N.,
Aupetit-Faisant, B., Corvol, P. and Pascoe, L. (1997)
The amino acid substitutions Ser288Gly and Val320Ala convert the cortisol
producing enzyme, CYP11B1, into an aldosterone producing.
Nature Struct. Biol. 4, 32-35.
17 January 1997.
-
Graham-Lorence, S., Truan, G., Peterson, J.A., Falck, J.R., Wei, S.,
Helvig, C. and Capdevila, J.H. (1997)
An active site substitution, F87V, converts cytochrome P450 BM-3 into a
regio- and stereoselective (14S,15R)-arachidonic acid
epoxygenase.
J. Biol. Chem. 272, 1127-1135.
10 January 1997.
-
Biochimie vol. 78, no. 8/9, 1996.
Special issue:
Cytochrome P450: Structure and Interactions.
3 January 1997.
This paper appears in an amazing issue of Chemical Reviews
on Bioinorganic Enzymology
(Chemical Reviews vol. 96, no. 7, 1996).
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