Archive of Kirill's Review of the Week - 2007

by Kirill Degtyarenko

Last modified: Fri Jan 11 09:48:52 GMT 2008

21 December 2007.

• Bock, C. and Lengauer, T. (2008) Computational epigenetics. Bioinformatics 24, 1-10.

14 December 2007.

• Jose, J. and Meyer, T.F. (2007) The autodisplay story, from discovery to biotechnical and biomedical applications. Microbiol. Mol. Biol. Rev. 71, 600-619.

7 December 2007.

• Nakanishi, N., Takeuchi, F. and Tsubaki, M. (2007) Histidine cycle mechanism for the concerted proton/electron transfer from ascorbate to the cytosolic haem b centre of cytochrome b₅₆₁: a unique machinery for the biological transmembrane electron transfer. J. Biochem. (Tokyo) 142, 553-560.

30 November 2007.

• Nájera, C. and Sansano, J.N. (2007) Catalytic asymmetric synthesis of α-amino acids. Chem. Rev. 107, 4584-4671.

23 November 2007.

• Uenoa, T., Abea, S., Yokoia, N. and Watanabe, Y. (2007) Coordination design of artificial metalloproteins utilizing protein vacant space. Coordination Chemistry Reviews 251, 2717-2731.

16 November 2007.

• Gulshan, K. and Moye-Rowley, W.S. (2007) Multidrug resistance in fungi. Eukaryotic Cell 6, 1933-1942.

9 November 2007.

• Martin, G. and Keller, W. (2007) RNA-specific ribonucleotidyl transferases. RNA 13, 1834-1849.

2 November 2007.

• Ferrandon, D., Imler, J.-L., Hetru, C. and Hoffmann, J.A. (2007) The Drosophila systemic immune response: sensing and signalling during bacterial and fungal infections. Nature Rev. Immunol. 7, 862-874.

26 October 2007.

• Sharon, N. (2007) Celebrating the golden anniversary of the discovery of bacillosamine, the diamino sugar of a Bacillus. Glycobiology 17, 1150-1155.

19 October 2007.

• Shen, Q.-H. and Schulze-Lefert, P. (2007) Rumble in the nuclear jungle: compartmentalization, trafficking, and nuclear action of plant immune receptors. EMBO J. 26, 4293-4301.

12 October 2007.

• Wasternack, C. (2007) Jasmonates: an update on biosynthesis, signal transduction and action in plant stress response, growth and development. Annals of Botany 100, 681-697.

5 October 2007.

Not one but three free-access mini-reviews on post-translational modifications.

• Nadolski, M.J. and Linder, M.E. (2007) Protein lipidation. FEBS J. 274, 5202-5210.
• Lippens, G., Landrieu, I. and Smet, C. (2007) Molecular mechanisms of the phospho-dependent prolyl cis/trans isomerase Pin1. FEBS J. 274, 5211-5222.
• Hatahet, F. and Ruddock, L.W. (2007) Substrate recognition by the protein disulfide isomerases. FEBS J. 274, 5223-5234.

28 September 2007.

• Sorek, R. (2007) The birth of new exons: Mechanisms and evolutionary consequences. RNA 13, 1603-1608.

14 September 2007.

• Stamatis, A., Malandrinos, G., Louloudi, M. and Hadjiliadis, N. (2007) New perspectives on thiamine catalysis: from enzymic to biomimetic catalysis. Bioinorganic Chemistry and Applications 2007, 23286.

7 September 2007.

• Miethke, M. and Marahiel, M.A. (2007) Siderophore-based iron acquisition and pathogen control. Microbiol. Mol. Biol. Rev. 71, 413-451.

24 August 2007.

• Thompson, D.H., Zhou, M., Grey, J. and Kim, H.-k. (2007) Design, synthesis, and performance of NTA-modified lipids as templates for histidine-tagged protein crystallization. Chemistry Letters 36, 956-977.

17 August 2007.

• Finkel, T., Serrano, M. and Blasco, M.A. (2007) The common biology of cancer and ageing. Nature 448, 767-774.

10 August 2007.

• Szabó, C., Ischiropoulos, H. and Radi, R. (2007) Peroxynitrite: biochemistry, pathophysiology and development of therapeutics. Nature Reviews Drug Discovery 6, 662-680.

3 August 2007.

• Yanofsky, C. (2007) RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria. RNA 13, 1141-1154.

27 July 2007.

• Macario, A.J. and Conway de Macario, E. (2007) Chaperonopathies and chaperonotherapy. FEBS Lett. 581, 3681-3688.

20 July 2007.

• Kern, J. and Renger, G. (2007) Photosystem II: Structure and mechanism of the water:plastoquinone oxidoreductase. Photosynth. Res. 94, 183-202.

13 July 2007.

• Gershenzon, J. and Dudareva, N. (2007) The function of terpene natural products in the natural world. Nature Chem. Biol. 3, 408-414.

6 July 2007.

• Gifford, J.L., Walsh, M.P. and Vogel, H.J. (2007) Structures and metal-ion-binding properties of the Ca²⁺-binding helix-loop-helix EF-hand motifs. Biochem. J. 405, 199-221.

29 June 2007.

• Neufeld, J.D., Wagner, M. and Murrell, J.C. (2007) Who eats what, where and when? Isotope-labelling experiments are coming of age. The ISME Journal 1, 103-110.

22 June 2007.

• Escalante-Semerena, J.C. (2007) Conversion of cobinamide into adenosylcobamide in bacteria and archaea. J. Bacteriol. 189, 4555-4560.

15 June 2007.

• Alon, U. (2007) Network motifs: theory and experimental approaches. Nature Rev. Genet. 8, 450-461.

8 June 2007.

• Pigott, C.R. and Ellar, D.J. (2007) Role of receptors in Bacillus thuringiensis crystal toxin activity. Microbiol. Mol. Biol. Rev. 71, 255-281.

1 June 2007.

This time, two minireviews about love:

• Zeki, S. (2007) The neurobiology of love. FEBS Lett. 581, 2575-2579.
• Debiec, J. (2007) From affiliative behaviors to romantic feelings: A role of nanopeptides. FEBS Lett. 581, 2580-2586.

25 May 2007.

• Larsen, R.W. and Mikšovská, J. (2007) Time resolved thermodynamics of ligand binding to heme proteins. Coord. Chem. Rev. 251, 1101-1127.

18 May 2007.

• Solomon, E.I., Sarangi, R., Woertink, J.S., Augustine, A.J., Yoon, J. and Ghosh, S. (2007) O₂ and N₂O activation by bi-, tri-, and tetranuclear Cu clusters in biology. Acc. Chem. Res. 40, 581-591.

4 May 2007.

• Francis, C.A., Beman, J.M. and Kuypers, M.M.M. (2007) New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation. The ISME Journal 1, 19-27.

27 April 2007.

• Bianchi, L. and Lió, P. (2007) Forensic DNA and bioinformatics. Briefings in Bioinformatics 8, 117-128.

20 April 2007.

• Jambhekar, A. and DeRisi, J.L. (2007) Cis-acting determinants of asymmetric, cytoplasmic RNA transport. RNA 13, 625-642.

30 March 2007.

• Marques, M.P.M. and Batista de Carvalho, L.A.E. (2007) Vibrational spectroscopy studies on linear polyamines. Biochem. Soc. Trans. 35, 374-380.

23 March 2007.

• Norris, V., den Blaauwen, T., Cabin-Flaman, A., Doi, R.H., Harshey, R., Janniere, L., Jimenez-Sanchez, A., Jin, D.J., Levin, P.A., Mileykovskaya, E., Minsky, A., Saier, M., Jr. and Skarstad, K. (2007) Functional taxonomy of bacterial hyperstructures. Microbiol. Mol. Biol. Rev. 71, 230-253.

16 March 2007.

• Herceg, Z. (2007) Epigenetics and cancer: towards an evaluation of the impact of environmental and dietary factors. Mutagenesis 22, 91-103.

9 March 2007.

Not exactly a review - an editorial; short and to the point.

• Dauter, Z. and Baker, T. (2007) Numerology. Acta Crystallogr. D 63, 275.

2 March 2007.

• Swarup, V. and Rajeswari, M.R. (2007) Circulating (cell-free) nucleic acids - A promising, non-invasive tool for early detection of several human diseases. FEBS Lett. 581, 795-799.

23 February 2007.

• Pollak, N., Dölle, C. and Ziegler, M. (2007) The power to reduce: pyridine nucleotides – small molecules with a multitude of functions. Biochem. J. 402, 205-218.

16 February 2007.

• Coble, P.G. (2007) Marine optical biogeochemistry: the chemistry of ocean color. Chem. Rev. 107, 402-418.

9 February 2007.

• Heintzmann, R. and Ficz, G. (2006) Breaking the resolution limit in light microscopy. Briefings in Functional Genomics and Proteomics 5, 289-301.

2 February 2007.

• Ryde, U. (2007) Accurate metal-site structures in proteins obtained by combining experimental data and quantum chemistry. Dalton Trans. 2007, 607-625.

26 January 2007.

• Willner, I., Basnar, B. and Willner, B. (2007) Nanoparticle-enzyme hybrid systems for nanobiotechnology. FEBS J. 274, 302-309.

19 January 2007.

• Delarue, M. (2007) An asymmetric underlying rule in the assignment of codons: Possible clue to a quick early evolution of the genetic code via successive binary choices. RNA 13, 161-169.

• Sigel, R.K.O. and Pyle, A.M. (2007) Alternative roles for metal ions in enzyme catalysis and the implications for ribozyme chemistry. Chem. Rev. 107, 97-113.

5 January 2007.

• Dafforn, T.R. (2007) So how do you know you have a macromolecular complex? Acta Crystallogr. D 63, 17-25.

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