Archive of Kirill's Paper of the Week - 2000
By Kirill Degtyarenko
Last modified: Mon Aug 2 09:50:48 BST 2004
22 December 2000.
- Muñoz, A., Petering, D.H. and Shaw, C.F. III (2000)
Structure-reactivity relationships among metallothionein three-metal domains:
role of non-cysteine amino acid residues in lobster metallothionein and human
metallothionein-3.
Inorg. Chem. 39, 6114-6123.
15 December 2000.
- Von Dreele, R.B., Stephens, P.W., Smith, G.D. and Blessing, R.H. (2000)
The first protein crystal structure determined from high-resolution X-ray
powder diffraction data: a variant of T3R3 human
insulin-zinc complex produced by grinding.
Acta Crystallogr. D56, 1549-1553.
8 December 2000.
- Torres, J., Kukol, A. and Arkin, I.T. (2000)
Use of a single glycine residue to determine the tilt and orientation of a
transmembrane helix. A new structural label for infrared spectroscopy.
Biophys. J. 79, 3139-3143.
1 December 2000.
- Hammarberg, T., Provost, P., Persson, B. and Radmark, O. (2000)
The N-terminal domain of 5-lipoxygenase binds calcium and mediates calcium
stimulation of enzyme activity.
J. Biol. Chem. 275, 38787-38793.
24 November 2000.
- Sharath, A.N., Weinhold, E. and Bhagwat, A.S. (2000)
Reviving a dead enzyme: cytosine deaminations promoted by an inactive DNA
methyltransferase and an S-adenosylmethionine analogue.
Biochemistry 39, 14611-14616.
17 November 2000.
- Timmerman, P., Jolliffe, K.A., Calama, M.C., Weidmann, J.-L., Prins, L.J.,
Cardullo, F., Snellink-Ruël, B.H.M., Fokkens, R.H., Nibbering, N.M.M.,
Shinkai, S. and Reinhoudt, D.N. (2000)
Ag+ labeling: a convenient new tool for the characterization of
hydrogen-bonded supramolecular assemblies by MALDI-TOF mass spectrometry.
Chem. Eur. J. 6, 4104-4115.
10 November 2000.
After a very long break, let's start again...
6 October 2000.
- Moënne-Loccoz, P., Richter, O.-M.H., Huang, H.-w., Wasser, I.M.,
Ghiladi, R.A., Karlin, K.D. and de Vries, S. (2000)
Nitric oxide reductase from Paracoccus denitrificans contains an
oxo-bridged heme/non-heme diiron center.
J. Am. Chem. Soc. 122, 9344-9345.
29 September 2000.
- Costa, M., Michel, F. and Westhof, E. (2000)
A three-dimensional perspective on exon binding by a group II self-splicing
intron.
EMBO J. 19, 5007-5018.
22 September 2000.
15 September 2000.
8 September 2000.
- Gebbink, R.J.M.K., Klink, S.I., Feiters, M.C. and Nolte, R.J.M. (2000)
Fe4S4 clusters functionalized with molecular receptor
ligands.
Eur. J. Inorg. Chem., 2087-2099.
1 September 2000.
- George, G.N., Pickering, I.J., Yu, E.Y., Prince, R.C., Bursakov, S.A.,
Gavel, O.Yu., Moura, I. and Moura, J.J.G. (2000)
A novel protein-bound copper-molybdenum cluster.
J. Am. Chem. Soc. 122, 8321-8322.
[Supplementary Material]
Postulated structure for the
[S2MoS2CuS2MoS2]3-
cluster of the orange protein from Desulfovibrio gigas.
25 August 2000.
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18 August 2000.
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Ban, N., Nissen, P., Hansen, J., Moore, P.B. and Steitz, T.A. (2000)
The complete atomic structure of the large ribosomal subunit at 2.4 Å
resolution.
Science 289, 905-920.
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Nissen, P., Hansen, J., Ban, N., Moore, P.B. and Steitz, T.A. (2000)
The structural basis of ribosome activity in peptide bond synthesis.
Science 289, 905-920.
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11 August 2000.
- Jovine, L., Djordjevic, S. and Rhodes, D. (2000)
The crystal structure of yeast phenylalanine tRNA at 2.0 Å resolution:
cleavage by Mg2+ in 15-year old crystals.
J. Mol. Biol. 301, 401-414.
4 August 2000.
- Indiani, C., Feis, A., Howes, B.D., Marzocchi, M.P. and Smulevich, G. (2000)
Benzohydroxamic acid-peroxidase complexes: spectroscopic characterization of a
novel heme spin species.
J. Am. Chem. Soc. 122, 7368-7376.
The binding of benzohydroxamic acid to class III plant peroxidases yields
hexacoordinate quantum mechanically admixed
S = 5/2 and S = 3/2
state never observed in haem proteins before.
21 July 2000.
14 July 2000.
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7 July 2000.
30 June 2000.
- Selzer, T., Albeck, S. and Schreiber, G. (2000)
Rational design of faster associating and tighter binding protein complexes.
Nature Struct. Biol. 7, 537-541.
23 June 2000.
Prokaryotic enzymes fold faster!
16 June 2000.
- Tolbert, T.J. and Wong, C.-H. (2000)
Intein-mediated synthesis of proteins containing carbohydrates and other
molecular probes.
J. Am. Chem. Soc. 122, 5421-5428.
9 June 2000.
2 June 2000.
- Kolbe, M., Besir, H., Essen, L.-O. and Oesterhelt, D. (2000)
Structure of the light-driven chloride pump halorhodopsin at 1.8 Å
resolution.
Science 288, 1390-1396.
26 May 2000.
- Chiu, M.L., Nollert, P., Loewen, M.C., Belrhali, H., Pebay-Peyroula, E.,
Rosenbuscha, J.P. and Landau, E.M. (2000)
Crystallization in cubo: general applicability to membrane proteins.
Acta Crystallogr. D56, 781-784.
19 May 2000.
- Kumaran, S., Datta, D. and Roy, R.P. (2000)
An enigmatic peptide ligation reaction: Protease-catalyzed oligomerization of a
native protein segment in neat aqueous solution.
Protein Science 9, 734-741.
12 May 2000.
- Wagenknecht, H.-A., Stemp, E.D.A. and Barton, J.K. (2000)
DNA-bound peptide radicals generated through DNA-mediated electron transport.
Biochemistry 39, 5483-5491.
5 May 2000.
- Douglas, T. and Stark, V.T. (2000)
Nanophase cobalt oxyhydroxide mineral synthesized within the protein cage.
Inorg. Chem. 39, 1828-1830.
21 April 2000.
- Moore, B., Persson, B.C., Nelson, C.C., Gesteland, R.F. and Atkins, J.F.
(2000)
Quadruplet codons: implications for code expansion and the specification of
translation step size.
J. Mol. Biol. 298, 195-209.
14 April 2000.
7 April 2000.
-
Geyer, A. and Frank Moser, F. (2000)
Polyol peptidomimetics.
Eur. J. Org. Chem., 1113-1120.
31 March 2000.
24 March 2000.
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Brown, K., Tegoni, M., Prudêncio, M., Pereira, A.S., Besson, S.,
Moura, J.J.G., Moura, I. and Cambillau, C. (2000)
A novel type of catalytic copper cluster in nitrous oxide reductase.
Nature Struct. Biol. 7, 191-195.
17 March 2000.
Why Viking 1976 Mars missions failed to find organic molecules on the Martian
surface.
10 March 2000.
The Space Shuttle brought back some beautiful crystals.
- Broutin-L'Hermite, I., Ries-Kautt, M. and Ducruix, A. (2000)
1.7 Å X-ray structure of space-grown collagenase crystals.
Acta Crystallogr. D56, 376-378.
3 March 2000.
25 February 2000.
- McMillan, K., Adler, M., Auld, D.S., Baldwin, J.J., Blasko, E.,
Browne, L.J., Chelsky, D., Davey, D., Dolle, R.E., Eagen, K.A., Erickson, S.,
Feldman, R.I., Glaser, C.B., Mallari, C., Morrissey, M.M., Ohlmeyer, M.H.J.,
Pan, G., Parkinson, J.F., Phillips, G.B., Polokoff, M.A., Sigal, N.H.,
Vergona, R., Whitlow, M., Young, T.A. and Devlin, J.J. (2000)
Allosteric inhibitors of inducible nitric oxide synthase dimerization
discovered via combinatorial chemistry.
Proc. Natl. Acad. Sci. USA 97, 1506-1511.
18 February 2000.
- Hollfelder, F., Kirby, A.J., Tawfik, D.S., Kikuchi, K. and Hilvert, D.
(2000)
Characterization of proton-transfer catalysis by serum albumins.
J. Am. Chem. Soc. 122, 1022-1029.
11 February 2000.
-
Zhang, Z., Ren, J., Stammers, D.K., Baldwin, J.E., Harlos, K. and
Schofield, C.J. (2000)
Structural origins of the selectivity of the trifunctional oxygenase clavaminic
acid synthase.
Nature Struct. Biol. 7, 127-133.
4 February 2000.
- Croney, J.C., Helms, M.K., Jameson, D.M. and Larsen, R.W. (2000)
Temperature dependence of photoinduced electron transfer within self-assembled
uroporphyrin-cytochrome c complexes.
J. Phys. Chem. B104, 1088-1096.
28 January 2000.
- Weik, M., Ravelli, R.B.G., Kryger, G., McSweeney, S., Raves, M.L.,
Harel, M., Gros, P., Silman, I., Kroon, J. and Sussman, J.L. (2000)
Specific chemical and structural damage to proteins produced by synchrotron
radiation.
Proc. Natl. Acad. Sci. USA 97, 623-628.
21 January 2000.
- Korenberg, M., Solomon, J.E. and Regelson, M.E. (2000)
Parallel cascade identification as a means for automatically classifying
protein sequences into structure/function groups.
Biol. Cybernetics 82, 15-21.
14 January 2000.
-
Ilari, A., Stefanini, S., Chiancone, E. and Tsernoglou, D. (2000)
The dodecameric ferritin from Listeria innocua contains a novel
intersubunit iron-binding site.
Nature Struct. Biol. 7, 38-43.
In contrast to other known ferritins, that have 24 subunits, the
Listeria ferritin has 12 subunits. The ferroxidase site is not contained
within a four-helix bundle but situated at the interface of two different
subunits.
7 January 2000.
- Wang, C.C.-Y., Ho, D.M. and Groves, J.T. (1999)
Models of nitric oxide synthase: iron(III) porphyrin-catalyzed oxidation of
fluorenone oxime to nitric oxide and fluorenone.
J. Am. Chem. Soc. 121, 12094-12103.
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-helices that insert
spontaneously.
Biochemistry 39, 4415-4422.
