Archive of Kirill's Paper of the Week - 1998
by Kirill Degtyarenko
Last modified: Mon Aug 2 10:39:54 BST 2004
25 December 1998.
Collman, J.P., Fu, L., Herrmann, P.C., Wang, Z., Rapta, M.,
Bröring, M., Schwenninger, R. and Boitrel, B. (1998)
A functional model of cytochrome c oxidase: Thermodynamic implications.
Angew. Chem. Int. Ed. 37, 3397-3400.
18 December 1998.
11 December 1998.
- McFail-Isom, L., Shui, X. and Williams, L.D. (1998)
Divalent cations stabilize unstacked conformations of DNA and RNA by
interacting with base systems.
Biochemistry 37, 17105 -17111.
4 December 1998.
27 November 1998.
- Bates, P.A., Dokurno, P., Freemont, P.S. and Sternberg, M.J.E. (1998)
Conformational analysis of the first observed non-proline
cis-peptide bond occurring within the complementarity determining region
(CDR) of an antibody.
J. Mol. Biol. 284, 549-555.
20 November 1998.
- De Graaf, R.M., Visscher, J., Xu, Y., Arrhenius, G. and Schwartz, A.W.
Mineral catalysis of a potentially prebiotic aldol condensation.
J. Mol. Evol. 47, 501-507.
13 November 1998.
- Tochio, H., Ohki, S., Zhang, Q., Li, M. and Zhang, M. (1998)
Solution structure of a protein inhibitor of neuronal nitric oxide synthase.
Nature Struct. Biol. 5, 965-969.
6 November 1998.
Takai-Igarashi, T. and Kaminuma, T. (1998)
A pathway finding system for the cell signaling networks database.
In Silico Biology 1, 0012.
30 October 1998.
23 October 1998.
Hoiczyk, E. and Baumeister, W. (1998)
The junctional pore complex, a prokaryotic secretion organelle, is the
molecular motor underlying gliding motility in cyanobacteria.
Curr. Biol. 8, 1161-1168.
16 October 1998.
Stoddard, B.L., Cohen, B.E., Brubaker, M., Mesecar, A.D. and
Koshland, D.E., Jr. (1998)
Millisecond Laue structures of an enzyme-product complex using
photocaged substrate analogs.
Nature Struct. Biol. 5, 891-897.
9 October 1998.
See, R.F., Kruse, R.A. and Strub, W.M. (1998)
Metal-ligand bond distances in first-row transition metal
coordination compounds: Coordination number, oxidation state, and specific
Inorg. Chem. 37, 5369-5375.
2 October 1998.
Russell, R.B., Sasieni, P.D. and Sternberg, M.J.E. (1998)
Nerve growth factor- and epidermal growth factor-stimulated
translocation of the ADP-ribosylation factor-exchange factor
GRP1 to the plasma membrane of PC12 cells requires activation of
phosphatidylinositol 3-kinase and the GRP1 pleckstrin homology domain.
Biochem. J. 335, 139-146.
25 September 1998.
Russell, R.B., Sasieni, P.D. and Sternberg, M.J.E. (1998)
Supersites within superfolds. Binding site similarity in the absence of
J. Mol. Biol. 282, 903-918.
18 September 1998.
Terwilliger, T.C., Waldo, G., Peat, T.S., Newman, J.M., Chu, K. and
Berendzen, J. (1998)
Class-directed structure determination: Foundation for a Protein
Protein Science 7, 1851-1856.
11 September 1998.
Gier, T.E., Bu, X., Feng, P. and Stucky, G.D. (1998)
Synthesis and organization of zeolite-like materials with
three-dimensional helical pores.
Nature 395, 154-157.
4 September 1998.
Marinsky, J.A., Kodama, H. and Miyajima, T. (1998)
An approach for assessment of the hydrophobicity/hydrophilicity of
J. Phys. Chem. B102, 6949-6957.
28 August 1998.
14 August 1998.
Xu, D. and Schulten, K. (1998)
Model for the light-harvesting complex I (B875) of Rhodobacter
Biophys. J. 75, 683-694.
7 August 1998.
- Kristensen, O., Vassylyev, D.G., Tanaka, F., Morikawa, K. and Fujii, I.
A structural basis for transition-state stabilization in
antibody-catalyzed hydrolysis: Crystal structures of an abzyme at
1.8 Å resolution.
J. Mol. Biol. 281, 501-511.
31 July 1998.
- Turner, D.L., Brennan, L., Chamberlin, S.G., Louro, R.O. and Xavier, A.V.
Determination of solution structures of paramagnetic proteins by NMR.
Eur. Biophys. J. 27, 367-375.
24 July 1998.
Astier, J.P., Veesler, S. and Boistelle, R. (1998)
Protein crystals orientation in a magnetic field.
Acta Crystallogr. D54, 703-706.
17 July 1998.
Elcock, A.H. and McCammon, J.A. (1998)
Electrostatic contributions to the stability of halophilic proteins.
J. Mol. Biol. 280, 731-748.
10 July 1998.
Ishida, Y., Konishi, K., Aida, T. and Nagamune, T. (1998)
Apocytochrome b562 as a novel chiral host molecule:
The first enantioselective reconstitution.
Chem. Eur. J. 4, 1148-1153.
(199 Kb PDF file)
3 July 1998.
Bornholdt, S. and Sneppen, K. (1998)
Neutral mutations and punctuated equilibrium in evolving genetic networks.
Phys. Rev. Lett. 81, 236-239.
26 June 1998.
The database of "hot spots" of binding energy of the protein-protein
interfaces is available at
19 June 1998.
Shingyoji, C., Higuchi, H., Yoshimura, M., Katayama, E. and Yanagida, T.
Dynein arms are oscillating force generators.
Nature 393, 711-714.
12 June 1998.
5 June 1998.
Kauppi, B., Lee, K., Carredano, E., Parales, R.E., Gibson, D.T., Eklund, H. and
Ramaswamy, S. (1998)
Structure of an aromatic-ring-hydroxylating dioxygenase - naphthalene
Structure 6, 571-586.
29 May 1998.
Also see other
an NAS Colloquium on Computational Biomolecular Science.
22 May 1998.
Benson, D.E., Wisz, M.S., Liu, W. and Hellinga, H.W. (1998)
Construction of a novel redox protein by rational design: Conversion of a
disulfide bridge into a mononuclear iron-sulfur center.
Biochemistry 37, 7070-7076.
15 May 1998.
Colasanti, J., Yuan, Z. and Sundaresan, V. (1998)
The indeterminate gene encodes a zinc finger protein and regulates a
leaf-generated signal required for the transition to flowering in maize.
Cell 93, 593-603.
8 May 1998.
Larsen, T.A., Olson, A.J. and Goodsell, D.S. (1998)
Morphology of protein-protein interfaces.
Structure 6, 421-427.
1 May 1998.
The crystal structure of isoleucyl-tRNA synthetase is presented at
2.5 Å resolution.
Nureki, O., Vassylyev, D.G., Tateno, M., Shimada, A., Nakama, T., Fukai, S.,
Konno, M., Hendrickson, T.L., Schimmel, P. and Yokoyama, S. (1998)
Enzyme structure with two catalytic sites for double-sieve selection of
Science 280, 578-582.
24 April 1998.
Kirshenbaum, K., Barron, A.E., Goldsmith, R.A., Armand, P., Bradley, E.K.,
Truong, K.T.V., Dill, K.A., Cohen, F.E. and Zuckermann, R.N. (1998)
Sequence-specific polypeptoids: A diverse family of heteropolymers with
stable secondary structure.
Proc. Natl. Acad. Sci. USA 95, 4303-4308.
17 April 1998.
Grigorieff, N. (1998)
Three-dimensional structure of bovine NADH:ubiquinone
oxidoreductase (complex I) at 22 Å in ice.
J. Mol. Biol. 277, 1033-1046.
10 April 1998.
Hofstetter, O., Hofstetter, H., Schurig, V., Wilchek, M. and Green, B.S.
Antibodies can recognize the chiral center of free
J. Am. Chem. Soc. 120, 3251-3252.
3 April 1998.
- Steinberg-Yfrach, G., Rigaud, J.-L., Durantini, E.N., Moore, A.L., Gust, D.
and Moore, T.A. (1998)
Light-driven production of ATP catalysed by
F0F1-ATP synthase in an artificial photosynthetic
Nature 392, 479-482.
27 March 1998.
- Noveron, J.C., Olmstead, M.M. and Mascharak, P.K. (1998)
Effect of carboxamido N coordination to iron on the redox potential of
low-spin non-heme iron centers with N,S coordination:
Relevance to the iron site of nitrile hydratase.
Inorg. Chem. 37, 1138-1139.
20 March 1998.
13 March 1998.
Perl, D., Welker, C., Schindler, T., Schröder, K., Marahiel, M.A.,
Jaenicke, R. and Schmid, F.X. (1998)
Conservation of rapid two-state folding in mesophilic, thermophilic and
hyperthermophilic cold shock proteins.
Nature Struct. Biol. 5, 229-235.
6 March 1998.
Yun, B.H., Jeon, S.H., Cho, T.-S., Yi, S.Y., Sehlstedt, U. and Kim, S.K.
Binding mode of porphyrins to poly[d(A-T)2] and
Biophys. Chem. 70, 1-10.
27 February 1998.
Yao, S., Ghosh, I., Zutshi, R. and Chmielewski, J. (1998)
A self-replicating peptide under ionic control.
Angew. Chem. Int. Ed. 37, 478-481.
20 February 1998.
Liu, Z., Reches, M., Groisman, I. and Engelberg-Kulka, H. (1998)
The nature of the minimal `selenocysteine insertion sequence' (SECIS) in
Nucleic Acids Res. 26, 896-902.
13 February 1998.
Di Giulio, M. (1997)
On the RNA world: evidence in favor of an early ribonucleopeptide world.
J. Mol. Evol. 45, 571-578.
6 February 1998.
Li, H., Yamada, H. and Akasaka, K. (1998)
Effect of pressure on individual hydrogen bonds in proteins. Basic pancreatic
Biochemistry 37, 1167-1173.
30 January 1998.
Zenno, S., Kobori, T., Tanokura, M. and Saigo, K. (1998)
Conversion of NfsA, the major Escherichia coli nitroreductase, to a
flavin reductase with an activity similar to that of Frp, a flavin reductase
in Vibrio harveyi, by a single amino acid substitution.
J. Bacteriol. 180, 422-425.
23 January 1998.
Blackwood, M.E., Jr., Rush III, T.S., Romesberg, F., Schultz, P.G. and
Spiro, T.G. (1998)
Alternative modes of substrate distortion in enzyme and antibody catalyzed
Biochemistry 37, 779-782.
16 January 1998.
Ji, Q., Lloyd, C.R., Ellis, W.R., Jr. and Eyring, E.M. (1998)
Sol-gel-encapsulated heme proteins. Evidence for CO2
J. Am. Chem. Soc. 120, 221-222.
9 January 1998.
2 January 1998.
Bonfantini, E.E., Burrell, A.K., Officer, D.L., Reid, D.C.W., McDonald, M.R.,
Cocks, P.A. and Gordon, K.C. (1997)
Synthesis, characterization, structure, electrochemistry, and spectroscopy of
porphyrins that have a conjugated connection to donor/acceptor groups.
Inorg. Chem. 36, 6270-6278.
Kirill's Paper of the Week
Kirill's Paper of the Week - 2000
Kirill's Paper of the Week - 1999
Kirill's Paper of the Week - 1997
Kirill's Paper of the Week - 1996
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