Archive of Kirill's Paper of the Week - 1997
By Kirill Degtyarenko
Last modified: Thu Apr 15 14:03:42 BST 2004
26 December 1997.
Snyder, J.P., Nevins, N., Tardif, S.L. and Harpp, D.N. (1997)
Inherently hindered rotation about a disulfide bond.
J. Am. Chem. Soc. 119, 12685-12686.
19 December 1997.
12 December 1997.
Lee, D.H., Severin, K., Yokobayashi, Y. and Ghadiri, M.R. (1997)
Emergence of symbiosis in peptide self-replication through a hypercyclic
Nature 390, 591-594.
5 December 1997.
Gerstein, M. (1997)
A structural census of genomes: Comparing bacterial, eukaryotic, and
archaeal genomes in terms of protein structure.
J. Mol. Biol. 274, 562-576.
28 November 1997.
21 November 1997.
Ermler, U., Grabarse, W., Shima, S., Goubeaud, M. and Thauer, R.K. (1997)
Crystal structure of methyl-coenzyme M reductase: The key enzyme of
biological methane formation.
Science 278, 1457-1462.
14 November 1997.
Smith, D.R., Doucette-Stamm, L.A., Deloughery, C., Lee, H., Dubois, J.,
Aldredge, T., Bashirzadeh, R., Blakely, D., Cook, R., Gilbert, K.,
Harrison, D., Hoang, L., Keagle, P., Lumm, W., Pothier, B., Qiu, D.,
Spadafora, R., Vicaire, R., Wang, Y., Wierzbowski, J., Gibson, R., Jiwani, N.,
Caruso, A., Bush, D., Safer, H., Patwell, D., Prabhakar, S., McDougall, S.,
Shimer, G., Goyal, A., Pietrokovski, S., Church, G.M., Daniels, C.J.,
Mao, J.-i., Rice, P., Nölling, J. and Reeve, J.N. (1997)
Complete genome sequence of Methanobacterium thermoautotrophicum
H: Functional analysis and
J. Bacteriol. 179, 7135-7155.
7 November 1997.
31 October 1997.
Yao, S., Ghosh, I., Zutshi, R. and Chmielewski, J. (1997)
A pH-modulated, self-replicating peptide.
J. Am. Chem. Soc. 119, 10559-10560.
24 October 1997.
Kleywegt, G.J. (1997)
Validation of protein models from C
J. Mol. Biol. 273, 371-376.
17 October 1997.
Bruggeman, Y.E., Honegger, A., Kreuwel, H., Visser, A.J.W.G., Laane, C.,
Schots, A. and Hilhorst, R. (1997)
Regulation of the flavin redox potential by flavin-binding antibodies.
Eur. J. Biochem. 249, 393-400.
10 October 1997.
Ostermeier, C., Harrenga, A., Ermler, U. and Michel, H. (1997)
Structure at 2.7 Å resolution of the Paracoccus denitrificans
two-subunit cytochrome c oxidase complexed with an antibody
Proc. Natl. Acad. Sci. USA 94, 10547-10553.
3 October 1997.
Record denaturation temperature of a protein: 125°C.
Pfeil, W., Gesierich, U., Kleemann, G.R. and Sterner, R. (1997)
Ferredoxin from the hyperthermophile Thermotoga maritima is stable
beyond the boiling point of water.
J. Mol. Biol. 272, 591-596.
26 September 1997.
Moore, J.C., Jin, H.-M., Kuchner, O. and Arnold, F.H. (1997)
Strategies for the in vitro evolution of protein function: Enzyme
evolution by random recombination of improved sequences.
J. Mol. Biol. 272, 336-347.
19 September 1997.
Luger, K., Mäder, A.W., Richmond, R.K., Sargent, D.F. and Richmond, T.J.
Crystal structure of the nucleosome core particle at 2.8 Å resolution.
Nature 389, 251-260.
12 September 1997.
Jespersen, H.M., Kjærsgård, I.V.H., Østergaard, L. and
Welinder, K.G. (1997)
From sequence analysis of three novel ascorbate peroxidases from Arabidopsis
thaliana to structure, function and evolution of seven types of ascorbate
Biochem. J. 326, 305-310.
5 September 1997.
Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z.,
Miller, W. and Lipman, D.J. (1997)
Gapped BLAST and PSI-BLAST: a new generation of protein database search
Nucleic Acids Res. 25, 3389-3402.
29 August 1997.
22 August 1997.
Reeves, N.J. and Evans, J.S. (1997)
Polypeptide interactions at ice and biomineral interfaces are defined by
secondary structure-dependent chain orientations.
J. Phys. Chem. B101, 6665-6669.
15 August 1997.
Yeagle, P.L., Alderfer, J.L. and Albert, A.D. (1997)
Three-dimensional structure of the cytoplasmic face of the G protein
Biochemistry 36, 9649-9654.
8 August 1997.
Tomb, J.F., White, O., Kerlavage, A.R., Clayton, R.A., Sutton, G.G.,
Fleischmann, R.D., Ketchum, K.A., Klenk, H.P., Gill, S., Dougherty, B.A.,
Nelson, K., Quackenbush, J., Zhou, L., Kirkness, E.F., Peterson, S.,
Loftus, B., Richardson, D., Dodson, R., Khalak, H.G., Glodek, A., McKenney, K.,
Fitzegerald, L.M., Lee, N., Adams, M.D., Hickey, E.K., Berg, D.E.,
Gocayne, J.D., Utterback, T.R., Peterson, J.D., Kelley, J.M., Cotton, M.D.,
Weldman, J.M., Fujii, C., Bowman, C., Watthey, L., Wallin, E., Hayes, W.S.,
Borodovsky, M., Karp, P.D., Smith, H.O., Fraser, C.M. and Venter, J.C. (1997)
The complete genome sequence of the gastric pathogen Helicobacter pylori.
Nature 386, 539-548.
1 August 1997.
Kierzek, A.M., Wolf, W.M. and Zielenkiewicz, P. (1997)
Simulations of nucleation and early growth stages of protein crystals.
Biophys. J. 73, 571-580.
25 July 1997.
Berg, O.G. and Kurland, C.G. (1997)
Growth rate-optimised tRNA abundance and codon usage.
J. Mol. Biol. 270, 544-550.
18 July 1997.
Billeter, M., Riek, R., Wider, G., Hornemann, S., Glockshuber, R. and
Wüthrich, K. (1997)
Prion protein NMR structure and species barrier for prion diseases.
Acad. Sci. USA 94, 7281-7285.
11 July 1997.
Cho, G. and Doolittle, R.F. (1997)
Intron distribution in ancient paralogs supports random insertion and not
J. Mol. Evol. 44, 573-584.
4 July 1997.
Ng, J.D., Kuznetsov, Yu.G., Malkin, A.J., Keith, G., Giegé, R. and
McPherson, A. (1997)
Visualization of RNA crystal growth by atomic force microscopy.
Nucleic Acids Res. 25, 2582-2588.
27 June 1997.
Picard, M., Gross, J., Lübbert, E., Tölzer, S., Krauss, S.,
van Pée, K.-H. and Berkessel, A. (1997)
Metal-free bacterial haloperoxidases as unusual hydrolases:
Activation of H2O2 by the formation of peracetic acid.
Angew. Chem. Int. Ed. Engl. 36, 1196-1199.
20 June 1997.
The reaction of the novel tridentate compound
with Fe4S4 clusters gives 3:1 functionalised clusters.
Walsdordd, C., Saak, W. and Pohl, S. (1997)
A new preorganized tridentate ligand bearing three indolethiolate groups.
Preparation of 3:1 subsite-differentiated Fe4S4
J. Chem. Soc. Dalton Trans., No. 11, 1857-1861.
13 June 1997.
Russell, R.B., Saqi, M.A.S., Sayle, R.A., Bates, P.A. and Sternberg, M.J.E.
Recognition of analogous and homologous protein folds: analysis of
sequence and structure conservation.
J. Mol. Biol. 269, 423-439.
6 June 1997.
Huang, W., Jia, J., Cummings, J., Nelson, M., Schneider, G. and Lindqvist, Y.
Crystal structure of nitrile hydratase reveals a novel iron centre in a novel
Structure 5, 691-699.
30 May 1997.
Weber, A.L. (1997)
Energy from redox disproportionation of sugar carbon drives biotic and abiotic
J. Mol. Evol. 44, 361-370.
23 May 1997.
16 May 1997.
9 May 1997.
Sykora, M. and Kincaid, J.R. (1997)
Photochemical energy storage in a spatially organized zeolite-based
Nature 387, 162-164.
2 May 1997.
Moats, R.A., Fraser, S.E. and Meade, T.J. (1997)
A "smart" magnetic resonance imaging agent that reports on specific enzymatic
Angew. Chem. Int. Ed. Engl. 36, 726-728.
25 April 1997.
18 April 1997.
Kurzynski, M. (1997)
Protein machine model of enzymatic reactions gated by enzyme internal dynamics.
Biophys. Chem. 65, 1-28.
11 April 1997.
Koshi, J.M. and Goldstein, R.A. (1997)
Mutation matrices and physical-chemical properties: correlations and
Proteins 27, 336-344.
4 April 1997.
Zhang, C., Vasmatzis, G., Cornette, J.L. and DeLisi, C. (1997)
Determination of atomic desolvation energies from the structures of
J. Mol. Biol. 267, 707-726.
28 March 1997.
Busch, J.L.H., Breton, J.L., Bartlett, B.M., Armstrong, F.A., James, R. and
Thomson, A.J. (1997)
[3Fe-4S] [4Fe-4S] cluster
interconversion in Desulfovibrio africanus ferredoxin III:
properties of an Asp14Cys mutant.
Biochem. J. 323, 95-102.
21 March 1997.
Gohlke, U., Warne, A. and Saraste, M. (1997)
Projection structure of the cytochrome bo ubiquinol oxidase from
Escherichia coli at 6 Å resolution.
EMBO J. 16, 1181-1188.
14 March 1997.
Puente, X.S. and López-Otín, C. (1997)
The PLEES proteins: a family of structurally related enzymes widely
distributed from bacteria to humans.
Biochem. J. 322, 947-949.
7 March 1997.
Skourtis, S.S. and Beratan, D.N. (1997)
Electron transfer contact maps.
J. Phys. Chem. B 101, 1215-1234.
28 February 1997.
Mestre, B., Pitié, M., Loup, C., Claparols, C., Pratviel, G. and
Meunier, B. (1997)
Influence of the nature of the porphyrin ligand on the nuclease activity of
metalloporphyrin-oligonucleotide conjugates designed with cationic,
hydrophobic or anionic metalloporphyrins.
Nucleic Acids Res. 25, 1022-1027.
14 February 1997.
Visit LPFC at
7 February 1997.
Shu, L., Nesheim, J.C., Kauffmann, K., Münck, E., Lipscomb, J.D. and
Que, L., Jr. (1997)
An FeIV2O2 diamond core structure for the key
intermediate Q of methane monooxygenase.
Science 275, 515-518.
31 January 1997.
Riera, J., Robb, F.T., Weiss, R. and Fontecave, M. (1997)
Ribonucleotide reductase in the archaeon Pyrococcus furiosus: A critical
enzyme in the evolution of DNA genomes?
Proc. Natl. Acad. Sci. USA 94, 475-478.
24 January 1997.
Swartz, P.D., Beck, B.W. and Ichiye, T. (1996)
Structural origins of redox potentials in Fe-S proteins: Electrostatic
potentials of crystal structures.
Biophys. J. 71, 2958-2969.
17 January 1997.
Steinberg-Yfrach, G., Liddell, P.A., Hung, S.-H., Moore, A.L., Gust, D.
and Moore, T.A. (1997)
Conversion of light energy to proton potential in liposomes by artificial
photosynthetic reaction centres.
Nature 385, 239-241.
10 January 1997.
Hoover, D.M., Jarrett, J.T., Sands, R.H., Dunham, W.R., Ludwig, M.L. and
Matthews, R.G. (1997)
Interaction of Escherichia coli cobalamin-dependent methionine
synthase and its physiological partner flavodoxin: Binding of flavodoxin leads
to axial ligand dissociation from the cobalamin cofactor.
Biochemistry 36, 127-138.
3 January 1997.
Gotoh, O. (1996)
Significant improvement in accuracy of multiple protein sequence alignments by
iterative refinement as assessed by reference to structural alignments.
J. Mol. Biol. 264, 823-838.
Kirill's Paper of the Week
Kirill's Paper of the Week - 2000
Kirill's Paper of the Week - 1999
Kirill's Paper of the Week - 1998
Kirill's Paper of the Week - 1996
Back to the Directory of P450-containing Systems home page: