Archive of Kirill's Paper of the Week - 2008

by Kirill Degtyarenko

Last modified: Fri Jul 11 15:55:57 BST 2008

4 July 2008.

Janowski, R., Auerbach-Nevo, T. and Weiss, M.S. (2008) Bacterioferritin from Mycobacterium smegmatis contains zinc in its di-nuclear site. Protein Science 17, 1138-1150.

27 June 2008.

Bröring, M., Köhler, S. and Kleeberg, C. (2008) Norcorrole: observation of the smallest porphyrin variant with a N₄ core. Angewandte Chemie International Edition, in press.

20 June 2008.

Darcy, I.K., Scharein, R.G. and Stasiak, A. (2008) 3D visualization software to analyze topological outcomes of topoisomerase reactions. Nucleic Acids Res. 36, 3515-3521.

13 June 2008.

Pfoh, R., Laatsch, H. and Sheldrick, G.M. (2008) Crystal structure of trioxacarcin A covalently bound to DNA. Nucleic Acids Res. 36, 3508-3514.

6 June 2008.

Aragão, D., Mitchell, E.P., Frazão, C.F., Carrondo, M.A. and Lindley, P.F. (2008) Structural and functional relationships in the hybrid cluster protein family: structure of the anaerobically purified hybrid cluster protein from Desulfovibrio vulgaris at 1.35 Å resolution. Acta Crystallogr. D64, 665-674.

30 May 2008.

Long, J.A., Trinajstic, K., Young, G.C. and Senden, T. (2008) Live birth in the Devonian period. Nature 453, 650-652.

23 May 2008.

Regulski, E.E., Moy, R.H., Weinberg, Z., Barrick, J.E., Yao, Z., Ruzzo, W.L. and Breaker, R.R. (2008) A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism. Mol. Microbiol. 68, 918-932.

16 May 2008.

Maeda, K., Henbest, K.B., Cintolesi, F., Kuprov, I., Rodgers, C.T., Liddell, P.A., Gust, D., Timmel, C.R. and Hore, P.J. (2008) Chemical compass model of avian magnetoreception. Nature 453, 387-390.

2 May 2008.

Muñoz, E. and Deem, M.W. (2008) Amino acid alphabet size in protein evolution experiments: better to search a small library thoroughly or a large library sparsely? PEDS 21, 311-317.

25 April 2008.

Taglieber, A., Schulz, F., Hollmann, F., Rusek, M. and Reetz, M.T. (2008) Light-driven biocatalytic oxidation and reduction reactions: scope and limitations. ChemBioChem 9, 565-572.

18 April 2008.

Haranczyk, M. and Gutowski, M. (2008) Visualization of molecular orbitals and the related electron densities. J. Chem. Theory Comput., in press.

11 April 2008.

Zou, P., Groves, M.R., Viale-Bouroncle, S.D. and Orué Lucana, D.O. (2008) Crystallization and preliminary characterization of a novel haem-binding protein of Streptomyces reticuli. Acta Crystallogr. F64.

28 March 2008.

Hoff, B., Pöggeler, S. and Kück, U. (2008) Eighty years after its discovery, Fleming's Penicillium strain discloses the secret of its sex. Eukaryotic Cell 7, 465-470.

21 March 2008.

Hiraki, T., Shibayama, N., Akashi, S. and Park, S.Y. (2008) Crystal structures of the clock protein EA4 from the silkworm Bombyx mori. J. Mol. Biol. 377, 630-635.

14 March 2008.

Lima-Mendez, G., Van Helden, J., Toussaint, A. and Leplae, R. (2008) Reticulate representation of evolutionary and functional relationships between phage genomes. Mol. Biol. Evol. 25, 762-777.

7 March 2008.

Xu, Y., Feng, L., Jeffrey, P.D., Shi, Y. and Morel, F.M.M. (2008) Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms. Nature 452, 56-61.

29 February 2008.

Dokmanić, I., Šikić, M. and Tomić, S. (2008) Metals in proteins: correlation between the metal-ion type, coordination number and the amino-acid residues involved in the coordination. Acta Crystallogr. D64, 257-263.

22 February 2008.

Neumann, H., Peak-Chew, S.Y. and Chin, J.W. (2008) Genetically encoding N^ε-acetyllysine in recombinant proteins. Nature Chemical Biology 4, 232-234.

8 February 2008.

von Canstein, H., Ogawa, J., Shimizu, S. and Lloyd, J.R. (2008) Secretion of flavins by Shewanella species and their role in extracellular electron transfer. Appl. Environ. Microbiol. 74, 615-623.

1 February 2008.

Birzele, F., Csaba, G. and Zimmer, R. (2008) Alternative splicing and protein structure evolution. Nucleic Acids Res. 36, 550-558.

25 January 2008.

Frith, M.C., Valen, E., Krogh, A., Hayashizaki, Y., Carninci, P. and Sandelin, A. (2008) A code for transcription initiation in mammalian genomes. Genome Res. 18, 1-12.

18 January 2008.

Errami, M., Hicks, J.M., Fisher, W., Trusty, D., Wren, J.D., Long, T.C. and Garner, H.R. (2008) Déjà vu - a study of duplicate citations in Medline. Bioinformatics 24, 243-249.

Visit Déjà vu, the duplicate citation database.

11 January 2008.

Kim, J.D., Ohta, T. and Tsujii, J. (2008) Corpus annotation for mining biomedical events from literature. BMC Bioinformatics 9, 10.

The event-annotated corpus and the annotation guidelines are made publicly available in XML at the homepage of GENIA Project.

4 January 2008.

Lemaster, D.M., Anderson, J.S., Wang, L., Guo, Y., Li, H. and Hernandez, G. (2008) NMR and X-ray analysis of structural additivity in metal binding site-swapped hybrids of rubredoxin. BMC Struct. Biol. 7, 81.

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