Accession numbers for Fe-S component of three component-type P450-containing systems

Accession numbers for iron-sulphur components of three component-type P450-containing systems

Compiled by Kirill N. Degtyarenko (kirill@icgeb.trieste.it)

last modified:

The members of adrenodoxin family are soluble [Fe₂S₂] iron-sulphur proteins that act as single electron carriers. In mitochondrial monooxygenase systems, adrenodoxin transfers an electron from NADPH:adrenodoxin reductase to membrane-bound P450. In bacteria, putidaredoxin and terpredoxin serve as electron carriers between corresponding NADH-dependent ferredoxin reductases and soluble P450.

In a few bacterial P450-containing systems, the transfer of electrons from flavoprotein reductase to P450 is mediated by [Fe₃S₄] ferredoxins. Despite functional similarity of such ferredoxins to the adrenodoxin family, they do not share sequence similarity. On the other hand, [Fe₃S₄] proteins seem to be similar to some mono-[Fe₄S₄] cluster ferredoxins, but lack a fourth cysteine residue conserved in [Fe₄S₄] ferredoxins.

A. Adrenodoxin family [Fe₂S₂] ferredoxins

                                                                           
 Gene   Species      PIR     SwissProt       GenBank/EMBL/DDBJ            PRF

Adrenodoxins

ADX1      bov  JX0094          P00257  M11746  D00467  D00468  D00469  1110265A
                                       D00470  D00471  M19474  M19656  1604300A
ADX2      bov  JX0094          P08498  M16934
ADX       hum  A31853          P10109  J03548  M18003                  1404334A
                                       M23665  M23666  M23667  M23668  1502217A
          pig  A00261          P00258  M57674                          0406216A
          she  S21131          P29330                                  1809210A
                                                                       1810330A
          rat  A39553          P24483  D50436                          1713250A
          mou                          L29123                          2108273A
                                       D43689  D43690                  2119182A
          chi  A31574          P13216  M21275  U25823                  1414191A

YPL252c   Sce                          Z73608
???       Spo                          Z70043

MIPS protein superfamily: 0029.0

Pfam family: PF00111

Bacterial ferredoxins

camB      Psp  A00262  JX0079  P00259  D00528  J05406                  1607265B

terpB     Pse  S27655          P33007  M91440                          1817293B

thcC      Rho                  P43493  U17130                          2104333J

fdx       Eco  JC1110          P25528  M88654  U05338  U01827          1812268A

fdx       Hin                  P44428  L45013

fdxB      Cac  S32573          P37098  X51607 

fdVI      Rca  S45612          P80306                                  2014236A

MIPS protein superfamily: 0029.0

MIPS protein domain family: 00254

Pfam family: PF00111

B. Bacterial [Fe₃S₄] ferredoxins

                                                                           
 Gene   Species      PIR     SwissProt       GenBank/EMBL/DDBJ            PRF   
                                                                                
suaB      Sgl  A37915          P18324  M32238  M36480                  1704152A
subB      Sgl  B37915          P18325  M32239  M36481                  1704152B
soyB      Stg  S24751          P26910  X63601  S45823                  1819469B
fasB      Rfa  S42053                  Z29635                          2011281B
ORF3      Bja                  Q45218  U12678
???       Tli  B44203          P29604

fdxA      Ser  JH0239          P24496  M61119

MIPS protein domain family: 00121

Pfam family: PF00037

Species abbreviations

Bja = Bradyrhizobium japonicum
bov = bovine
Cac = Caulobacter crescentus
chi = chicken
Eco = Escherichia coli
Hin = Haemophilus influenzae
hum = human
pig = pig
Pse = Pseudomonas species
Psp = Pseudomonas putida
rat = rat
Rca = Rhodobacter capsulatus (Rhodopseudomonas capsulata)
Rfa = Rhodococcus fascians
Rho = Rhodococcus species
Sce = Saccharomyces cerevisiae (baker's yeast)
Ser = Saccharopolyspora erythraea
Sgl = Streptomyces griseolus
she = sheep
Spo = Schizosaccharomyces pombe
Stg = Streptomyces griseus
Tli = Thermococcus litoralis